EU foreign policy chief Federica Mogherini said Monday she was "surprised" after Turkish President Recep Tayyip Erdogan lashed out at Brussels for criticising mass arrests targeting opposition media.

"I've seen the reaction from President Erdogan and I'm very surprised," said Mogherini, pointing out that Erdogan's call for the EU to "mind its own business" came just a week after she visited Turkey for talks with him.

Mogherini said she and her EU colleagues had then had "very constructive" talks with Erdogan and both sides had understood there was a "chance for a new start" with a new executive in Brussels and a new government in Ankara.

Members of the government, she said, even pointed out that Turkish efforts to join the EU were not so much about economic interests but about the values of democracy and the rule of law.

"I believe it is in the Turkish interest to be consistent with this commitment," she added.

"There is this will to work on this new start otherwise we would not have paid this visit," she said.

"The idea was and still is that of working in a consistent and coherent way on the EU accession," Mogherini said.

Turkish police on Sunday arrested over two dozen people including the editor of Turkey's biggest-selling newspaper and other media figures in lightning raids on supporters of US-based Muslim cleric Fethullah Gulen, who has become Erdogan's number one nemesis.

Mogherini and enlargement commissioner Johannes Hahn condemned the police raids as going "against the European values" and said they were "incompatible with the freedom of media, which is a core principle of democracy."

In a television speech Monday, Erdogan said "the European Union cannot interfere in steps taken... within the rule of law against elements that threaten our national security."

He added: "They should mind their own business."

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